{"id":20341,"date":"2026-04-08T14:03:51","date_gmt":"2026-04-08T13:03:51","guid":{"rendered":"https:\/\/cabd.es\/investigation\/departments\/regulacion-genica-y-morfogenesis\/dr-barbara-pernaute\/"},"modified":"2026-11-05T15:34:06","modified_gmt":"2026-11-05T14:34:06","slug":"dr-barbara-pernaute","status":"publish","type":"page","link":"https:\/\/cabd.es\/en\/investigation\/departments\/genome-dynamics\/dr-barbara-pernaute\/","title":{"rendered":"Dr B\u00e1rbara Pernaute"},"content":{"rendered":"<p>[et_pb_section bb_built=&#8221;1&#8243; fullwidth=&#8221;on&#8221; specialty=&#8221;off&#8221; next_background_color=&#8221;#000000&#8243; inner_width=&#8221;auto&#8221; inner_max_width=&#8221;1080px&#8221;][et_pb_fullwidth_header background_overlay_color=&#8221;rgba(31,31,31,0.56)&#8221; subhead_font_color=&#8221;#bebebe&#8221; _builder_version=&#8221;4.27.6&#8243; title_font=&#8221;Montserrat|700|||||||&#8221; title_text_color=&#8221;#ffffff&#8221; title_font_size=&#8221;45px&#8221; content_font=&#8221;Montserrat|600|||||||&#8221; 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button_one_text_shadow_vertical_length=&#8221;button_one_text_shadow_style,%91object Object%93&#8243; button_one_text_shadow_blur_strength=&#8221;button_one_text_shadow_style,%91object Object%93&#8243; button_two_text_shadow_horizontal_length=&#8221;button_two_text_shadow_style,%91object Object%93&#8243; button_two_text_shadow_vertical_length=&#8221;button_two_text_shadow_style,%91object Object%93&#8243; button_two_text_shadow_blur_strength=&#8221;button_two_text_shadow_style,%91object Object%93&#8243;]<\/p>\n<p style=\"text-align: left\">Genome Dynamics<\/p>\n<h1 class=\"el-title uk-heading-bullet uk-margin-top uk-margin-remove-bottom\">Cell fate determination in early mammalian development<\/h1>\n<p>[\/et_pb_fullwidth_header][\/et_pb_section][et_pb_section bb_built=&#8221;1&#8243; _builder_version=&#8221;4.16&#8243; _module_preset=&#8221;default&#8221; global_colors_info=&#8221;{}&#8221; prev_background_color=&#8221;#000000&#8243;][et_pb_row column_structure=&#8221;1_4,3_4&#8243; _builder_version=&#8221;4.16&#8243; 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We are interested in understanding the first critical steps of this process in mammals during which totipotency, the ability to give rise to all tissues of the developing embryo, is first gained and then rapidly lost. The emergence of totipotency involves a dramatic epigenetic, transcriptomic and metabolic reprogramming, which we are only beginning to understand, and occurs more or less concurrently with the transcriptional activation of the zygotic genome. Potency then gets gradually restricted, first with the specification of the mammal specific extraembryonic lineages, that will support embryo growth\u00a0<em>in utero<\/em>, and later though the formation of the germline and three germ layers which will give rise to the fetus itself.<\/p>\n<p>The processes that occur at the early stages of mammalian development, particularly zygotic genome activation and the cellular reprogramming that accompanies totipotency emergence likely put a large amount of genomic and cellular stress on the embryo. This is a time when preserving genome integrity is crucial as any cell has the potential to contribute to a large proportion of the embryo and the germ line. Indeed, both ourselves and others have previously shown that cell death and DNA damage responses are dynamically regulated prior to embryo lineage specification, and that this is influenced by multiple factors, including alterations in alternative splicing, microRNA regulation or mitochondrial dynamics.<\/p>\n<p>In our lab we use mouse embryos and embryonic stem cells and a wide variety of experimental approaches; including genome editing, functional genomics, embryo micromanipulation and confocal imaging, to investigate how the mechanisms involved in the regulation of genome integrity and cell death are coordinated with early developmental processes, both to ensure embryo viability and fitness and to facilitate the acquisition of totipotency and cell fate determination.<\/p>\n<\/div>\n<p><img decoding=\"async\" class=\"alignnone wp-image-20337 lazyload\" style=\"--smush-placeholder-width: 651px; --smush-placeholder-aspect-ratio: 651\/323;display: block;margin-left: auto;margin-right: auto\" data-src=\"https:\/\/cabd.es\/wp-content\/uploads\/2026\/04\/Dr-Barbara-Pernaute2.jpg\" alt=\"\" width=\"651\" height=\"323\" data-srcset=\"https:\/\/cabd.es\/wp-content\/uploads\/2026\/04\/Dr-Barbara-Pernaute2.jpg 651w, https:\/\/cabd.es\/wp-content\/uploads\/2026\/04\/Dr-Barbara-Pernaute2-480x238.jpg 480w\" data-sizes=\"(min-width: 0px) and (max-width: 480px) 480px, (min-width: 481px) 651px, 100vw\" src=\"data:image\/svg+xml;base64,PHN2ZyB3aWR0aD0iMSIgaGVpZ2h0PSIxIiB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciPjwvc3ZnPg==\" \/><\/p>\n<p>Activation of the ATM DNA damage response (red) upon induction of DNA lesions is lower in 2 cell (left) than early morula (right) stage mouse embryos\u00a0<em>(Wyatt, Pernaute et al, 2022)<\/em>.<\/p>\n<p>[\/et_pb_text][et_pb_divider show_divider=&#8221;off&#8221; 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ol_text_shadow_vertical_length_tablet=&#8221;0px&#8221; ol_text_shadow_blur_strength_tablet=&#8221;1px&#8221; quote_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; quote_text_shadow_vertical_length_tablet=&#8221;0px&#8221; quote_text_shadow_blur_strength_tablet=&#8221;1px&#8221; header_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; header_text_shadow_vertical_length_tablet=&#8221;0px&#8221; header_text_shadow_blur_strength_tablet=&#8221;1px&#8221; header_2_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; header_2_text_shadow_vertical_length_tablet=&#8221;0px&#8221; header_2_text_shadow_blur_strength_tablet=&#8221;1px&#8221; header_3_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; header_3_text_shadow_vertical_length_tablet=&#8221;0px&#8221; header_3_text_shadow_blur_strength_tablet=&#8221;1px&#8221; header_4_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; header_4_text_shadow_vertical_length_tablet=&#8221;0px&#8221; header_4_text_shadow_blur_strength_tablet=&#8221;1px&#8221; header_5_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; header_5_text_shadow_vertical_length_tablet=&#8221;0px&#8221; header_5_text_shadow_blur_strength_tablet=&#8221;1px&#8221; header_6_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; header_6_text_shadow_vertical_length_tablet=&#8221;0px&#8221; header_6_text_shadow_blur_strength_tablet=&#8221;1px&#8221; box_shadow_horizontal_tablet=&#8221;0px&#8221; box_shadow_vertical_tablet=&#8221;0px&#8221; box_shadow_blur_tablet=&#8221;40px&#8221; box_shadow_spread_tablet=&#8221;0px&#8221; global_colors_info=&#8221;{%22gcid-primary-color%22:%91%22header_text_color%22%93}&#8221; sticky_enabled=&#8221;0&#8243;]<\/p>\n<h2 class=\"uk-heading-divider uk-margin-medium-bottom\">Relevant publications<\/h2>\n<hr \/>\n<p>&nbsp;<\/p>\n<p>See <a href=\"https:\/\/orcid.org\/0000-0002-8706-1126\">ORCID<\/a> \/ <a href=\"https:\/\/scholar.google.com\/citations?user=_veALAsAAAAJ&amp;hl=en&amp;oi=ao\">Google Scholar<\/a> for a complete record<\/p>\n<p>* &#8211; equal contribution; \u2020 &#8211; corresponding author<\/p>\n<ul>\n<li>Zaffagnini G, Cheng S,\u00a0 Salzer MC, <strong>Pernaute B<\/strong>, Duran JM, Irimia M, Schuh M, B\u00f6ke E\u2020 (2024).\u00a0Mouse oocytes sequester aggregated proteins in degradative super-organelles. <strong><span><em>Cell<\/em><\/span><\/strong>. Feb 29;187(5):1109-1126.e21. doi: 10.1016\/j.cell.2024.01.031.<\/li>\n<li><strong style=\"font-size: 18px\">Pernaute B<\/strong><strong style=\"font-size: 18px\">*<\/strong><strong style=\"font-size: 18px\">,<\/strong><span style=\"font-size: 18px\"> Sanchez-Nieto JM*, P\u00e9rez-Montero S*, di Gregorio A, Lima A,\u2026, and Rodr\u00edguez TA\u2020 (2022). DRP1 levels determine the apoptotic threshold during embryonic differentiation through a mitophagy-dependent mechanism. <\/span><strong style=\"font-size: 18px\"><em>Dev Cell.<\/em><\/strong><span style=\"font-size: 18px\"> un 6;57(11):1316-1330.e7<\/span><\/li>\n<li>Wyatt CDR*, <strong style=\"font-size: 18px\">Pernaute B<\/strong><span style=\"font-size: 18px\">*\u2020, Gohr A, Miret-Cuesta M,\u2026, and Irimia M\u2020 (2022). A developmentally programmed splicing failure contributes to DNA damage response attenuation during mammalian zygotic genome activation. <\/span><strong style=\"font-size: 18px\"><em>Sci Adv <\/em><\/strong><span style=\"font-size: 18px\">Apr 15;8(15):eabn4935<\/span><\/li>\n<li>Spruce T\u2020, Plass M, Gohr A,\u2026, <strong style=\"font-size: 18px\">Pernaute B<\/strong><span style=\"font-size: 18px\">\u2020 and Irimia M\u2020 (2022). The X-linked splicing regulator MBNL3 has been co-opted to restrict placental growth in eutherians. <\/span><strong style=\"font-size: 18px\"><em>Plos Biol<\/em><\/strong><span style=\"font-size: 18px\"> Apr 27;20(4):e3001615<\/span><\/li>\n<li><strong style=\"font-size: 18px\">Pernaute B<\/strong><span style=\"font-size: 18px\">, Spruce T, Smith KM,&#8230;, and Rodriguez TA\u2020 (2014). MicroRNAs control the apoptotic threshold in primed pluripotent stem cells through regulation of BIM. <\/span><strong style=\"font-size: 18px\"><em>Genes &amp; Dev<\/em><\/strong><span style=\"font-size: 18px\">. Sep 1;28(17):1873-8.<\/span><\/li>\n<\/ul>\n<p>[\/et_pb_text][et_pb_divider show_divider=&#8221;off&#8221; _builder_version=&#8221;4.27.6&#8243; _module_preset=&#8221;d057b755-ffa8-4fcd-923c-c94b7c9a9123&#8243; global_colors_info=&#8221;{%22gcid-primary-color%22:%91%22color%22%93}&#8221; \/][et_pb_text _builder_version=&#8221;4.27.6&#8243; _module_preset=&#8221;dc6ab383-11a3-454b-8ba1-6554be6042b4&#8243; vertical_offset_tablet=&#8221;0&#8243; horizontal_offset_tablet=&#8221;0&#8243; hover_enabled=&#8221;0&#8243; z_index_tablet=&#8221;0&#8243; text_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; text_text_shadow_vertical_length_tablet=&#8221;0px&#8221; text_text_shadow_blur_strength_tablet=&#8221;1px&#8221; link_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; link_text_shadow_vertical_length_tablet=&#8221;0px&#8221; link_text_shadow_blur_strength_tablet=&#8221;1px&#8221; ul_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; ul_text_shadow_vertical_length_tablet=&#8221;0px&#8221; ul_text_shadow_blur_strength_tablet=&#8221;1px&#8221; ol_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; ol_text_shadow_vertical_length_tablet=&#8221;0px&#8221; ol_text_shadow_blur_strength_tablet=&#8221;1px&#8221; quote_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; quote_text_shadow_vertical_length_tablet=&#8221;0px&#8221; quote_text_shadow_blur_strength_tablet=&#8221;1px&#8221; header_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; header_text_shadow_vertical_length_tablet=&#8221;0px&#8221; header_text_shadow_blur_strength_tablet=&#8221;1px&#8221; header_2_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; header_2_text_shadow_vertical_length_tablet=&#8221;0px&#8221; header_2_text_shadow_blur_strength_tablet=&#8221;1px&#8221; header_3_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; header_3_text_shadow_vertical_length_tablet=&#8221;0px&#8221; header_3_text_shadow_blur_strength_tablet=&#8221;1px&#8221; header_4_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; header_4_text_shadow_vertical_length_tablet=&#8221;0px&#8221; header_4_text_shadow_blur_strength_tablet=&#8221;1px&#8221; header_5_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; header_5_text_shadow_vertical_length_tablet=&#8221;0px&#8221; header_5_text_shadow_blur_strength_tablet=&#8221;1px&#8221; header_6_text_shadow_horizontal_length_tablet=&#8221;0px&#8221; header_6_text_shadow_vertical_length_tablet=&#8221;0px&#8221; header_6_text_shadow_blur_strength_tablet=&#8221;1px&#8221; box_shadow_horizontal_tablet=&#8221;0px&#8221; box_shadow_vertical_tablet=&#8221;0px&#8221; box_shadow_blur_tablet=&#8221;40px&#8221; box_shadow_spread_tablet=&#8221;0px&#8221; global_colors_info=&#8221;{}&#8221; sticky_enabled=&#8221;0&#8243;]<\/p>\n<h2 class=\"uk-heading-divider uk-margin-medium-bottom\">Lab members &amp; collaborators<\/h2>\n<hr \/>\n<p>\u00a0<\/p>\n<p><strong>Principal Investigator<\/strong><\/p>\n<p style=\"padding-left: 40px\">Dra. Barbara Pernaute Lomba, bperlom@upo.es<\/p>\n<p><strong>Postdoctoral Researchers<\/strong><\/p>\n<p style=\"padding-left: 40px\">Dr. Guillermo Rodriguez Real<\/p>\n<p><strong>PhD Students<\/strong><\/p>\n<p style=\"padding-left: 40px\">Ana Mar\u00eda Sevilla<br \/>Julia Pawluk\u00a0<\/p>\n<p><strong>Lab Manager<\/strong><\/p>\n<p style=\"padding-left: 40px\">Ana Alcaina<\/p>\n<p><strong>Research Assistant<\/strong><\/p>\n<p style=\"padding-left: 40px\">Iris Guerrero<\/p>\n<p>If you&#8217;re interested in joining the lab for your PhD or postdoc please send your CV and a motivation letter to bperlom@upo.es<\/p>\n<p>[\/et_pb_text][et_pb_divider show_divider=&#8221;off&#8221; _builder_version=&#8221;4.27.6&#8243; _module_preset=&#8221;d057b755-ffa8-4fcd-923c-c94b7c9a9123&#8243; global_colors_info=&#8221;{%22gcid-primary-color%22:%91%22color%22%93}&#8221; \/][\/et_pb_column][\/et_pb_row][\/et_pb_section]<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Genome Dynamics Cell fate determination in early mammalian development Dr B\u00e1rbara Pernaute Principal Investigator Summary &nbsp; How can a single differentiated cell, the newly fertilized egg, give rise to an [&hellip;]<\/p>\n","protected":false},"author":3008,"featured_media":0,"parent":21588,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_et_pb_use_builder":"on","_et_pb_old_content":"","_et_gb_content_width":"","footnotes":""},"class_list":["post-20341","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/cabd.es\/en\/wp-json\/wp\/v2\/pages\/20341","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/cabd.es\/en\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/cabd.es\/en\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/cabd.es\/en\/wp-json\/wp\/v2\/users\/3008"}],"replies":[{"embeddable":true,"href":"https:\/\/cabd.es\/en\/wp-json\/wp\/v2\/comments?post=20341"}],"version-history":[{"count":22,"href":"https:\/\/cabd.es\/en\/wp-json\/wp\/v2\/pages\/20341\/revisions"}],"predecessor-version":[{"id":27984,"href":"https:\/\/cabd.es\/en\/wp-json\/wp\/v2\/pages\/20341\/revisions\/27984"}],"up":[{"embeddable":true,"href":"https:\/\/cabd.es\/en\/wp-json\/wp\/v2\/pages\/21588"}],"wp:attachment":[{"href":"https:\/\/cabd.es\/en\/wp-json\/wp\/v2\/media?parent=20341"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}